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1

A suppressor of axillary meristem maturation promotes longevity in flowering plants

Karami, Omid, Rahimi, Arezoo, Khan, Majid, Bemer, Marian, Hazarika, Rashmi R., Mak, Patrick, Compier, Monique, van Noort, Vera, Offringa, Remko

Journal:

Year:

2020

File:

PDF, 25.28 MB

2020

2

Evolution and functional cross-talk of protein post-translational modifications

Beltrao, Pedro, Bork, Peer, Krogan, Nevan J., van Noort, Vera

Journal:

Molecular Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

3

Comparative genomics of the Rab protein family in Apicomplexan parasites

Gordon Langsley, Vera van Noort, Céline Carret, Markus Meissner, Etienne P. de Villiers, Richard Bishop, Arnab Pain

Journal:

Microbes and Infection

Year:

2008

Language:

english

File:

PDF, 739 KB

english, 2008

4

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

van Noort, Vera, Snel, Berend, Huynen, Martijn A

Journal:

Year:

2004

Language:

english

File:

PDF, 152 KB

english, 2004

5

Comparative genomics for reliable protein-function prediction from genomic data

Martijn A Huynen, Berend Snel, Vera van Noort

Journal:

Trends in Genetics

Year:

2004

Language:

english

File:

PDF, 127 KB

english, 2004

6

Combinatorial gene regulation in Plasmodium falciparum

Vera van Noort, Martijn A. Huynen

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 128 KB

english, 2006

7

Predicting gene function by conserved co-expression

Vera van Noort, Berend Snel, Martijn A. Huynen

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 127 KB

english, 2003

8

Strand misalignments lead to quasipalindrome correction

Vera van Noort, Peder Worning, David W. Ussery, William A. Rosche, Richard R. Sinden

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 330 KB

english, 2003

9

Orthology prediction at scalable resolution by phylogenetic tree analysis

René TJM van der Heijden, Berend Snel, Vera van Noort, Martijn A Huynen

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 340 KB

english, 2007

10

Insight into Structure and Assembly of the Nuclear Pore Complex by Utilizing the Genome of a Eukaryotic Thermophile

Stefan Amlacher, Phillip Sarges, Dirk Flemming, Vera van Noort, Ruth Kunze, Damien P. Devos, Manimozhiyan Arumugam, Peer Bork, Ed Hurt

Journal:

Year:

2011

Language:

english

File:

PDF, 2.43 MB

english, 2011

11

Drug discovery in the age of systems biology: the rise of computational approaches for data integration

Murat Iskar, Georg Zeller, Xing-Ming Zhao, Vera van Noort, Peer Bork

Journal:

Current Opinion in Biotechnology

Year:

2012

Language:

english

File:

PDF, 663 KB

english, 2012

12

Consistent mutational paths predict eukaryotic thermostability

Vera van Noort, Bettina Bradatsch, Manimozhiyan Arumugam, Stefan Amlacher, Gert Bange, Chris Creevey, Sebastian Falk, Daniel R Mende, Irmgard Sinning, Ed Hurt, Peer Bork

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 725 KB

english, 2013

13

Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions

Vera van Noort, Berend Snel, Martijn A Huynen

Journal:

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

14

A quantitative liposome microarray to systematically characterize protein-lipid interactions

Saliba, Antoine-Emmanuel, Vonkova, Ivana, Ceschia, Stefano, Findlay, Greg M, Maeda, Kenji, Tischer, Christian, Deghou, Samy, van Noort, Vera, Bork, Peer, Pawson, Tony, Ellenberg, Jan, Gavin, Anne-Clau

Journal:

Year:

2013

Language:

english

File:

PDF, 850 KB

english, 2013

15

Deciphering a global network of functionally associated post-translational modifications

Minguez, Pablo, Parca, Luca, Diella, Francesca, Mende, Daniel R, Kumar, Runjun, Helmer-Citterich, Manuela, Gavin, Anne-Claude, van Noort, Vera, Bork, Peer

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 560 KB

english, 2012

16

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium

van Noort, Vera, Seebacher, Jan, Bader, Samuel, Mohammed, Shabaz, Vonkova, Ivana, Betts, Matthew J, Kühner, Sebastian, Kumar, Runjun, Maier, Tobias, O'Flaherty, Martina, Rybin, Vladimir, Schmeisky, Ar

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 623 KB

english, 2012

17

Drug-Induced Regulation of Target Expression

Iskar, Murat, Campillos, Monica, Kuhn, Michael, Jensen, Lars Juhl, van Noort, Vera, Bork, Peer, Kitano, Hiroaki

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.37 MB

english, 2010

18

Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication"

Chen, Wei-Hua, Zhao, Xing-Ming, van Noort, Vera, Bork, Peer, Keinan, Alon

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 228 KB

english, 2014

19

Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data

Zhao, Xing-Ming, Iskar, Murat, Zeller, Georg, Kuhn, Michael, van Noort, Vera, Bork, Peer, Altman, Russ B.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 540 KB

english, 2011

20

Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity

Lasonder, Edwin, Janse, Chris J., van Gemert, Geert-Jan, Mair, Gunnar R., Vermunt, Adriaan M. W., Douradinha, Bruno G., van Noort, Vera, Huynen, Martijn A., Luty, Adrian J. F., Kroeze, Hans, Khan, Sha

Journal:

Year:

2008

Language:

english

File:

PDF, 468 KB

english, 2008

21

Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs

Chen, Wei-Hua, Zhao, Xing-Ming, van Noort, Vera, Bork, Peer, Lengauer, Thomas

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 885 KB

english, 2013

22

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

Vonkova, Ivana, Saliba, Antoine-Emmanuel, Deghou, Samy, Anand, Kanchan, Ceschia, Stefano, Doerks, Tobias, Galih, Augustinus, Kugler, Karl G., Maeda, Kenji, Rybin, Vladimir, van Noort, Vera, Ellenberg,

Journal:

Year:

2015

Language:

english

File:

PDF, 3.62 MB

english, 2015

23

Discovery and validation of the antimetastatic activity of citalopram in colorectal cancer

Iskar, Murat, Bork, Peer, van Noort, Vera

Journal:

Molecular & Cellular Oncology

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

24

Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances

Chen, Wei-Hua, van Noort, Vera, Lluch-Senar, Maria, Hennrich, Marco L., H. Wodke, Judith A., Yus, Eva, Alibés, Andreu, Roma, Guglielmo, Mende, Daniel R., Pesavento, Christina, Typas, Athanasios, Gavin

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.59 MB

english, 2016

25

CART – a chemical annotation retrieval toolkit

Deghou, Samy, Zeller, Georg, Iskar, Murat, Driessen, Marja, Castillo, Mercedes, van Noort, Vera, Bork, Peer

Journal:

Year:

2016

Language:

english

File:

PDF, 1.00 MB

english, 2016

26

yMap: An automated method to map yeast variants to protein modifications and functional regions

Arslan, Ahmed, van Noort, Vera

Journal:

Year:

2016

Language:

english

File:

PDF, 202 KB

english, 2016

27

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts

Zhang, Zhicheng, Boonen, Kurt, Ferrari, Piero, Schoofs, Liliane, Janssens, Ewald, van Noort, Vera, Rolland, Filip, Geuten, Koen

Journal:

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

28

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana

Hazarika, Rashmi R., De Coninck, Barbara, Yamamoto, Lidia R., Martin, Laura R., Cammue, Bruno P. A., van Noort, Vera

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1020 KB

english, 2017

29

Catabolic task division between two interchangeable near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model

Albers, Pieter, Lood, Cédric, Özturk, Basak, Horemans, Benjamin, Lavigne, Rob, van Noort, Vera, De Mot, René, Marchal, Kathleen, Sanchez-Rodriguez, Aminael, Springael, Dirk

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

30

Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219

Clauwers, Charlien, Lood, Cédric, van Noort, Vera, Michiels, Chris W.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

31

Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins

Doerks, Tobias, van Noort, Vera, Minguez, Pablo, Bork, Peer, Ranganathan, Shoba

Journal:

Year:

2012

Language:

english

File:

PDF, 571 KB

english, 2012

32

Catabolism of the groundwater micropollutant 2,6-dichlorobenzamide beyond 2,6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1

T’Syen, Jeroen, Raes, Bart, Horemans, Benjamin, Tassoni, Raffaella, Leroy, Baptiste, Lood, Cédric, van Noort, Vera, Lavigne, Rob, Wattiez, Ruddy, Kohler, Hans-Peter E., Springael, Dirk

Journal:

Applied Microbiology and Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

33

Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes

Sostaric, Nikolina, O'Reilly, Francis J., Giansanti, Piero, Heck, Albert J. R., Gavin, Anne-Claude, van Noort, Vera

Journal:

Molecular & Cellular Proteomics

Year:

2018

Language:

english

File:

PDF, 14.47 MB

english, 2018

34

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

Hazarika, Rashmi R., Sostaric, Nikolina, Sun, Yifeng, van Noort, Vera, Helmer-Citterich, Manuela

Journal:

Year:

2018

Language:

english

File:

PDF, 1.46 MB

english, 2018

35

Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole Genome Duplication

Zhang, Zhicheng, Coenen, Heleen, Ruelens, Philip, Hazarika, Rashmi Rekha, Al Hindi, Tareq, Oguis, Georgiana Kae, Vandeperre, Anja, van Noort, Vera, Geuten, Koen

Journal:

Year:

2018

Language:

english

File:

PDF, 4.36 MB

english, 2018

36

Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain

Botelho, João, Lood, Cédric, Partridge, Sally R., van Noort, Vera, Lavigne, Rob, Grosso, Filipa, Peixe, Luísa

Journal:

Emerging Microbes & Infections

Year:

2019

Language:

english

File:

PDF, 2.50 MB

english, 2019

37

A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex

Wittouck, Stijn, Wuyts, Sander, Meehan, Conor J., van Noort, Vera, Lebeer, Sarah, Gibbons, Sean M.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.30 MB

english, 2019

38

The Genome of the Plant-Associated Lactic Acid Bacterium Lactococcus lactis KF147 Harbors a Hybrid NRPS-PKS System Conserved in Strains of the Dental Cariogenic Streptococcus mutans

Khayatt, Barzan I., van Noort, Vera, Siezen, Roland J.

Journal:

Current Microbiology

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

39

The Genome of the Plant-Associated Lactic Acid Bacterium Lactococcus lactis KF147 Harbors a Hybrid NRPS-PKS System Conserved in Strains of the Dental Cariogenic Streptococcus mutans

Khayatt, Barzan I., van Noort, Vera, Siezen, Roland J.

Journal:

Current Microbiology

Year:

2019

File:

PDF, 2.99 MB

2019

40

Author Correction: Canonical germinant receptor is dispensable for spore germination in Clostridium botulinum group II strain NCTC 11219

Clauwers, Charlien, Lood, CÃ©dric, Van den Bergh, Bram, van Noort, Vera, Michiels, Chris W.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 627 KB

2020

41

Host Range Expansion of Pseudomonas Virus LUZ7 Is Driven by a Conserved Tail Fiber Mutation

Boon, Maarten, Holtappels, Dominique, Lood, CÃ©dric, van Noort, Vera, Lavigne, Rob

Journal:

Year:

2020

File:

PDF, 225 KB

2020

42

Completed Genomic Sequence of Bacillus thuringiensis HER1410 Reveals a Cry -Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage

Lechuga, Ana, Lood, CÃ©dric, Salas, Margarita, van Noort, Vera, Lavigne, Rob, Redrejo-RodrÃguez, Modesto

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 5.44 MB

2020

43

Reliable Identification of Environmental Pseudomonas Isolates Using the rpoD Gene

Girard, LÃ©a, Lood, CÃ©dric, Rokni-Zadeh, Hassan, van Noort, Vera, Lavigne, Rob, De Mot, RenÃ©

Journal:

Year:

2020

File:

PDF, 14.59 MB

2020

44

Quality control and statistical evaluation of combinatorial DNA libraries using nanopore sequencing

Lood, CÃ©dric, Gerstmans, Hans, Briers, Yves, Noort, Vera van, Lavigne, Rob

Journal:

Year:

2020

File:

PDF, 544 KB

2020